Last updated: 2023-12-20

Checks: 7 0

Knit directory: workflowr-policy-landscape/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

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Environment: empty

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Seed: set.seed(20220505)

The command set.seed(20220505) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

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Cache: none

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File paths: relative

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Repository version: a30bb03

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The results in this page were generated with repository version a30bb03. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .RData
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
    Ignored:    data/original_dataset_reproducibility_check/.DS_Store
    Ignored:    output/.DS_Store
    Ignored:    output/Figure_3B/.DS_Store
    Ignored:    output/created_datasets/.DS_Store

Untracked files:
    Untracked:  gutenbergr_0.2.3.tar.gz

Unstaged changes:
    Modified:   Policy_landscape_workflowr.R
    Modified:   data/original_dataset_reproducibility_check/original_cleaned_data.csv
    Modified:   data/original_dataset_reproducibility_check/original_dataset_words_stm_5topics.csv
    Modified:   output/Figure_3A/Figure_3A.png
    Modified:   output/created_datasets/cleaned_data.csv

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

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Rmd 903da06 zuzannazagrodzka 2023-12-05 Update the file paths for all analysis and figures
Rmd 011cd50 zuzannazagrodzka 2023-12-05 Adding my middle name letter
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html c494066 zuzannazagrodzka 2023-12-02 Build site.
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Rmd 13ccc72 zuzannazagrodzka 2023-11-10 wflow_publish("./analysis/index.Rmd")
html 7c2df56 Andrew Beckerman 2022-11-25 Build site.
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html a594d50 Andrew Beckerman 2022-11-25 Build site.
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Rmd e56dd90 Andrew Beckerman 2022-11-24 wflow_publish(c("analysis/index.Rmd"))
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html 1ed503f Andrew Beckerman 2022-11-24 catching up
Rmd 93838e7 Andrew Beckerman 2022-11-24 fixing paths in index
html 93838e7 Andrew Beckerman 2022-11-24 fixing paths in index
html a3f02dc Andrew Beckerman 2022-11-24 fixing paths in index
Rmd 9897f70 Andrew Beckerman 2022-11-24 Update the files for all analysis and figures
Rmd 1f00ab9 Andrew Beckerman 2022-11-24 fixing paths in index
html 693000e Andrew Beckerman 2022-11-24 Build site.
html 60a6c61 Andrew Beckerman 2022-11-24 Build site.
html fb90a00 Andrew Beckerman 2022-11-24 Build site.
Rmd e08d7ac Andrew Beckerman 2022-11-24 more organising and editing of workflowR mappings
html e08d7ac Andrew Beckerman 2022-11-24 more organising and editing of workflowR mappings
Rmd 5fd5163 Andrew Beckerman 2022-11-09 building workflowr files and structure
html 5fd5163 Andrew Beckerman 2022-11-09 building workflowr files and structure
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html 052dacd zuzannazagrodzka 2022-09-21 Build site.
Rmd e9218cc zuzannazagrodzka 2022-09-21 wflow_publish("analysis/index.Rmd")
html 796aa8e zuzannazagrodzka 2022-09-21 Build site.
Rmd efb1202 zuzannazagrodzka 2022-09-21 Publish other files
html e6302f4 zuzannazagrodzka 2022-09-20 Build site.
Rmd 7bf3f61 zuzannazagrodzka 2022-09-20 wflow_publish("analysis/index.Rmd")
Rmd 2e2a60a zuzannazagrodzka 2022-09-05 test
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html c99cf04 zuzannazagrodzka 2022-06-10 Build site.
Rmd 2a2476c zuzannazagrodzka 2022-06-10 Publish the initial files for myproject
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Rmd bcea695 zuzannazagrodzka 2022-05-12 Publish the initial files for myproject
html 98ec1e0 zuzannazagrodzka 2022-05-05 Build site.
html 4e2a292 ZZ 2022-05-05 Build site.
Rmd 80629ef ZZ 2022-05-05 Start workflowr project.
  1. Data and Data pre-processing
  1. Methodology - Topic modelling- analysis
  2. Methodology - Topic modeling - produce Fig 2A
  3. Methodology - Text similarities - analysis and Fig 2B
  4. Methodology - Language usage - analysis and Fig 2C
  5. Methodology - For and Not-for-Profit publishers, OA and non-OA journals Assessment - dictionary analysis
  6. Methodology - For and Not-for-Profit publishers, OA and non-OA journals Assessment - topic analysis
  7. Methodology - For and Not-for-Profit, OA and non-OA journals Assessment - dictionary analysis
  8. Methodology - For and Not-for-Profit, OA and non-OA journals Assessment - topic analysis
  9. Methodology - Figure ilustrating journals owned by societies
  10. Licence
  11. Additional Information - Session Info

sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/London
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.7.1

loaded via a namespace (and not attached):
 [1] vctrs_0.6.3       httr_1.4.7        cli_3.6.1         knitr_1.44       
 [5] rlang_1.1.1       xfun_0.40         stringi_1.7.12    processx_3.8.2   
 [9] promises_1.2.1    jsonlite_1.8.7    glue_1.6.2        rprojroot_2.0.3  
[13] git2r_0.32.0      htmltools_0.5.6   httpuv_1.6.11     ps_1.7.5         
[17] sass_0.4.7        fansi_1.0.4       rmarkdown_2.25    jquerylib_0.1.4  
[21] tibble_3.2.1      evaluate_0.21     fastmap_1.1.1     yaml_2.3.7       
[25] lifecycle_1.0.3   whisker_0.4.1     stringr_1.5.0     compiler_4.3.1   
[29] fs_1.6.3          pkgconfig_2.0.3   Rcpp_1.0.11       rstudioapi_0.15.0
[33] later_1.3.1       digest_0.6.33     R6_2.5.1          utf8_1.2.3       
[37] pillar_1.9.0      callr_3.7.3       magrittr_2.0.3    bslib_0.5.1      
[41] tools_4.3.1       cachem_1.0.8      getPass_0.2-2